OBO Foundry dashboard analysis¶

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/tmp/ipykernel_26197/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

RDF/XML Syntax    178
RDF/XML             3
OWL/XML Syntax      2
unknown             1
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 183 151070.809783 808974.985026 0.0 1487.50 7125.5 29861.75 9974927.0
Declaration 183 28575.521739 188181.418258 0.0 443.00 1211.0 5063.00 2438882.0
SubClassOf 178 38188.929348 214129.502237 0.0 347.25 1455.0 6722.00 2438853.0
EquivalentClasses 127 2659.570652 13606.037016 0.0 0.00 24.5 197.00 126605.0
SubAnnotationPropertyOf 116 9.092391 20.341273 0.0 0.00 2.0 7.00 162.0
TransitiveObjectProperty 115 6.217391 11.076807 0.0 0.00 2.0 6.00 69.0
SubObjectPropertyOf 102 41.722826 97.041562 0.0 0.00 2.0 38.50 674.0
DisjointClasses 94 30.331522 101.085117 0.0 0.00 1.0 21.00 848.0
ObjectPropertyRange 84 14.510870 26.738358 0.0 0.00 0.0 19.00 142.0
ObjectPropertyDomain 84 14.760870 27.555159 0.0 0.00 0.0 18.25 148.0
InverseObjectProperties 81 9.195652 17.857811 0.0 0.00 0.0 12.25 113.0
SubPropertyChainOf 65 9.516304 26.118682 0.0 0.00 0.0 2.00 149.0
ClassAssertion 63 79.804348 476.276754 0.0 0.00 0.0 18.00 5528.0
FunctionalObjectProperty 48 0.809783 1.699152 0.0 0.00 0.0 1.00 9.0
SymmetricObjectProperty 47 1.630435 8.495215 0.0 0.00 0.0 1.00 81.0
DataPropertyRange 44 1.108696 3.134356 0.0 0.00 0.0 0.00 30.0
DataPropertyDomain 39 1.048913 3.148909 0.0 0.00 0.0 0.00 32.0
IrrefexiveObjectProperty 36 0.581522 2.296085 0.0 0.00 0.0 0.00 26.0
DifferentIndividuals 34 0.809783 6.069877 0.0 0.00 0.0 0.00 82.0
AnnotationPropertyRangeOf 34 1.423913 10.558433 0.0 0.00 0.0 0.00 139.0
SubDataPropertyOf 30 0.847826 3.583309 0.0 0.00 0.0 0.00 33.0
EquivalentObjectProperties 29 1.429348 5.481754 0.0 0.00 0.0 0.00 36.0
FunctionalDataProperty 25 0.489130 1.525697 0.0 0.00 0.0 0.00 11.0
AsymmetricObjectProperty 21 0.510870 2.508977 0.0 0.00 0.0 0.00 26.0
InverseFunctionalObjectProperty 21 0.168478 0.552081 0.0 0.00 0.0 0.00 4.0
Rule 20 1.690217 5.739967 0.0 0.00 0.0 0.00 29.0
DisjointObjectProperties 15 0.233696 1.142691 0.0 0.00 0.0 0.00 10.0
ObjectPropertyAssertion 14 12.456522 101.683847 0.0 0.00 0.0 0.00 1024.0
ReflexiveObjectProperty 11 0.103261 0.484954 0.0 0.00 0.0 0.00 4.0
AnnotationPropertyDomain 10 0.266304 1.616092 0.0 0.00 0.0 0.00 17.0
DisjointUnion 7 0.086957 0.556181 0.0 0.00 0.0 0.00 5.0
DataPropertyAssertion 5 0.179348 1.601027 0.0 0.00 0.0 0.00 20.0
DatatypeDefinition 2 0.108696 1.402235 0.0 0.00 0.0 0.00 19.0
SameIndividual 1 0.005435 0.073721 0.0 0.00 0.0 0.00 1.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 182 116987.103261 630718.545723 0.0 1374.50 5452.5 20291.00 7316561.0
ObjectSomeValuesFrom 162 17033.750000 87119.133988 0.0 31.75 443.5 2822.25 853209.0
ObjectIntersectionOf 122 4122.945652 20240.232856 0.0 0.00 31.0 379.50 203016.0
ObjectUnionOf 87 26.945652 88.961509 0.0 0.00 0.0 15.25 767.0
ObjectAllValuesFrom 72 28.423913 147.340929 0.0 0.00 0.0 7.50 1764.0
ObjectComplementOf 62 14.255435 86.592728 0.0 0.00 0.0 2.00 1088.0
ObjectMinCardinality 61 2.391304 8.155533 0.0 0.00 0.0 1.00 57.0
ObjectExactCardinality 47 9.826087 88.509776 0.0 0.00 0.0 1.00 1193.0
ObjectOneOf 45 3.679348 28.190810 0.0 0.00 0.0 0.00 273.0
DataMinCardinality 27 0.255435 0.697359 0.0 0.00 0.0 0.00 4.0
DataSomeValuesFrom 23 6.934783 64.280006 0.0 0.00 0.0 0.00 859.0
DataExactCardinality 23 0.548913 1.645593 0.0 0.00 0.0 0.00 7.0
ObjectHasValue 21 224.891304 1926.674189 0.0 0.00 0.0 0.00 21288.0
ObjectMaxCardinality 19 0.809783 4.486983 0.0 0.00 0.0 0.00 41.0
DataHasValue 18 119.722826 1569.219393 0.0 0.00 0.0 0.00 21288.0
ObjectHasSelf 16 0.228261 0.959317 0.0 0.00 0.0 0.00 6.0
DataAllValuesFrom 3 0.103261 1.027060 0.0 0.00 0.0 0.00 13.0
DataMaxCardinality 2 0.010870 0.103972 0.0 0.00 0.0 0.00 1.0

OBO Score (Experimental)

ontology score score_dash score_impact
120 omo 0.962 0.956 0.967
150 ro 0.797 0.844 0.750
8 bfo 0.783 0.778 0.788
132 pato 0.712 0.956 0.467
64 go 0.702 0.904 0.500
110 obi 0.683 0.949 0.418
20 cl 0.621 0.949 0.293
102 ncbitaxon 0.604 0.822 0.386
166 uberon 0.585 0.800 0.370
44 envo 0.560 0.942 0.179
144 pr 0.549 0.853 0.245
35 doid 0.539 0.949 0.130
14 chebi 0.530 0.631 0.429
94 mondo 0.499 0.949 0.049
69 hp 0.496 0.867 0.125
139 plana 0.494 0.978 0.011
174 wbls 0.494 0.978 0.011
175 wbphenotype 0.494 0.978 0.011
113 ogms 0.486 0.727 0.245
40 eco 0.477 0.949 0.005
36 dpo 0.474 0.949 0.000
128 opl 0.472 0.927 0.016
96 mp 0.469 0.889 0.049
163 trans 0.466 0.904 0.027
63 gno 0.466 0.927 0.005
160 symp 0.466 0.882 0.049
111 obib 0.466 0.904 0.027
122 omrse 0.465 0.838 0.092
42 ecto 0.464 0.911 0.016
108 oba 0.458 0.889 0.027
46 eupath 0.453 0.889 0.016
134 pco 0.451 0.793 0.109
52 fbdv 0.449 0.882 0.016
138 phipo 0.447 0.882 0.011
11 caro 0.445 0.667 0.223
26 colao 0.445 0.889 0.000
133 pcl 0.445 0.889 0.000
80 lepao 0.445 0.889 0.000
50 fbbt 0.442 0.867 0.016
181 zfa 0.442 0.867 0.016
51 fbcv 0.441 0.860 0.022
172 vto 0.441 0.882 0.000
99 mro 0.441 0.882 0.000
73 iao 0.438 0.876 0.000
32 ddpheno 0.436 0.867 0.005
17 chmo 0.435 0.816 0.054
173 wbbt 0.435 0.860 0.011
13 cdno 0.433 0.867 0.000
169 vbo 0.433 0.867 0.000
125 ontoavida 0.430 0.860 0.000
183 zp 0.427 0.844 0.011
2 aism 0.427 0.838 0.016
37 dron 0.426 0.771 0.082
41 ecocore 0.424 0.844 0.005
152 rxno 0.421 0.838 0.005
95 mop 0.419 0.816 0.022
25 cob 0.419 0.822 0.016
66 hancestro 0.413 0.816 0.011
140 planp 0.413 0.822 0.005
58 fypo 0.413 0.822 0.005
9 bspo 0.412 0.727 0.098
180 zeco 0.411 0.822 0.000
59 gecko 0.410 0.816 0.005
0 ado 0.408 0.816 0.000
179 xpo 0.403 0.800 0.005
7 bco 0.399 0.793 0.005
141 po 0.395 0.698 0.092
75 ico 0.394 0.749 0.038
117 ohpi 0.394 0.787 0.000
38 duo 0.390 0.764 0.016
162 to 0.388 0.771 0.005
149 rbo 0.388 0.771 0.005
101 nbo 0.387 0.653 0.120
146 psdo 0.382 0.764 0.000
47 exo 0.380 0.733 0.027
61 geno 0.371 0.727 0.016
70 hsapdv 0.369 0.711 0.027
76 ido 0.368 0.616 0.120
57 fovt 0.366 0.733 0.000
21 clao 0.363 0.727 0.000
145 proco 0.363 0.727 0.000
45 epio 0.363 0.727 0.000
127 oostt 0.357 0.704 0.011
103 ncit 0.356 0.593 0.120
136 pdumdv 0.355 0.711 0.000
39 ecao 0.355 0.711 0.000
43 emapa 0.354 0.704 0.005
158 stato 0.352 0.622 0.082
177 xco 0.349 0.682 0.016
116 ohmi 0.347 0.689 0.005
27 cro 0.344 0.689 0.000
10 bto 0.344 0.660 0.027
130 ornaseq 0.344 0.689 0.000
34 disdriv 0.344 0.689 0.000
92 mmusdv 0.344 0.689 0.000
118 olatdv 0.344 0.689 0.000
135 pdro 0.338 0.653 0.022
5 apollo_sv 0.337 0.587 0.087
168 upheno 0.336 0.638 0.033
60 genepio 0.336 0.638 0.033
167 uo 0.335 0.511 0.158
16 chiro 0.334 0.667 0.000
78 kisao 0.334 0.667 0.000
15 cheminf 0.334 0.667 0.000
4 apo 0.334 0.667 0.000
68 hom 0.334 0.667 0.000
19 cio 0.334 0.667 0.000
159 swo 0.333 0.660 0.005
3 amphx 0.330 0.660 0.000
176 xao 0.330 0.644 0.016
1 agro 0.330 0.660 0.000
154 scdo 0.329 0.653 0.005
161 taxrank 0.328 0.644 0.011
48 fao 0.328 0.644 0.011
79 labo 0.327 0.653 0.000
143 ppo 0.327 0.653 0.000
98 mpio 0.325 0.644 0.005
28 cteno 0.322 0.644 0.000
81 ma 0.322 0.644 0.000
156 so 0.321 0.467 0.174
71 hso 0.319 0.638 0.000
178 xlmod 0.319 0.638 0.000
31 ddanat 0.317 0.622 0.011
129 opmi 0.316 0.593 0.038
91 mmo 0.316 0.616 0.016
49 fbbi 0.316 0.631 0.000
182 zfs 0.314 0.622 0.005
12 cdao 0.314 0.622 0.005
30 cvdo 0.314 0.616 0.011
109 obcs 0.310 0.593 0.027
89 miapa 0.308 0.616 0.000
84 mf 0.308 0.578 0.038
55 fobi 0.308 0.616 0.000
82 maxo 0.307 0.593 0.022
62 geo 0.304 0.571 0.038
112 ogg 0.302 0.549 0.054
107 oarcs 0.300 0.600 0.000
97 mpath 0.300 0.556 0.043
106 oae 0.298 0.504 0.092
67 hao 0.296 0.593 0.000
142 poro 0.296 0.593 0.000
148 pw 0.290 0.564 0.016
83 mco 0.289 0.578 0.000
23 clyh 0.289 0.578 0.000
29 cto 0.288 0.571 0.005
165 txpo 0.288 0.571 0.005
54 flopo 0.285 0.571 0.000
119 omit 0.285 0.542 0.027
151 rs 0.284 0.564 0.005
115 ohd 0.282 0.564 0.000
147 pso 0.278 0.556 0.000
86 mfoem 0.277 0.549 0.005
65 gsso 0.275 0.527 0.022
24 cmo 0.272 0.489 0.054
153 sbo 0.269 0.533 0.005
137 peco 0.269 0.511 0.027
87 mfomd 0.267 0.511 0.022
88 mi 0.267 0.511 0.022
100 ms 0.266 0.520 0.011
171 vt 0.264 0.511 0.016
126 ontoneo 0.260 0.520 0.000
104 ncro 0.258 0.504 0.011
53 fideo 0.256 0.511 0.000
164 tto 0.256 0.511 0.000
124 ons 0.253 0.489 0.016
105 nomen 0.252 0.504 0.000
6 aro 0.245 0.467 0.022
121 omp 0.245 0.467 0.022
77 ino 0.241 0.460 0.022
18 cido 0.239 0.467 0.011
170 vo 0.238 0.393 0.082
155 sepio 0.236 0.467 0.005
85 mfmo 0.234 0.467 0.000
123 one 0.230 0.460 0.000
74 iceo 0.230 0.460 0.000
72 htn 0.230 0.460 0.000
93 mod 0.227 0.438 0.016
33 dideo 0.225 0.438 0.011
157 spd 0.219 0.438 0.000
22 clo 0.202 0.333 0.071
131 ovae 0.197 0.393 0.000
114 ogsf 0.197 0.393 0.000
90 micro 0.192 0.378 0.005
56 foodon 0.000 0.000 0.000

OBO Score Summary

count mean std min 25% 50% 75% max
score 184.0 0.370766 0.117226 0.0 0.2995 0.344 0.435 0.962
score_dash 184.0 0.688663 0.163887 0.0 0.5710 0.667 0.826 0.978
score_impact 184.0 0.052745 0.133506 0.0 0.0000 0.011 0.027 0.967

OBO dependency graph